Input/Output Error 173

[Dennis Kautz]

uaaaah... was ist denn hier schief gegangen... ich hab überhaupt nix gemacht!!

[18:14:42] [SPG] Designing protein sequence 17 of 30
[18:21:33] [SPG] 10.0 %
[18:27:24] [SPG] 20.0 %
[18:32:20] [SPG] 30.0 %
[18:37:11] [SPG] 40.0 %
[18:42:04] [SPG] 50.0 %
[18:46:47] [SPG] 60.0 %
[18:51:44] [SPG] 70.0 %
[18:57:10] [SPG] 80.0 %
[19:02:57] [SPG] 90.0 %


Input/Output Error 173: Input file ended

In Procedure: write_pdb..writemain
At Line: 31

Statement: Formatted WRITE
Unit: 42
Connected To: work/current.pdb
Form: Formatted
Access: Sequential
Records Read : 0
Records Written: 1

End of diagnostics

[19:03:40] CoreStatus = 0 (0)
[19:03:40] Client-core communications error: ERROR 0x0
[19:03:40] Deleting current work unit & continuing...
[19:03:44] + Attempting to get work packet
[19:03:44] - Connecting to assignment server
[19:03:45] - Successful: assigned to (171.64.122.125).
[19:03:45] + News From Folding@Home: Welcome to Folding@Home
[19:03:45] Loaded queue successfully.
[19:03:46] - Deadline time not received.
[19:03:47] + Closed connections
[19:03:52]
[19:03:52] + Processing work unit
[19:03:52] Core required: FahCore_ca.exe
[19:03:52] Core found.
[19:03:52] Working on Unit 01 [November 6 19:03:52]
[19:03:52] + Working ...
[19:03:53] Folding@home Protein Design Core Version 2.06 (Feb 25, 2003)
[19:03:53]
[19:03:53] Proj: work/wudata_01
[19:03:53] Finding work files
[19:03:53] sizeof(CORE_PACKET_HDR) = 512
[19:03:53] Checking frame files
[19:03:53] - Couldn't open work/wudata_01.chk
[19:03:53] Starting from initial work packet
[19:03:53]
[19:03:53] Updating shared core-client information
[19:03:53] - Writing "work/wudata_01.key": (overwrite)successful.
[19:03:53] Key file to update shared file: work/wudata_01.key
[19:03:53] keyfile: 0 105 200 15 2 1 0
[19:03:53] Protein: Des2/pdb1wwc.10.spa
[19:03:53] - Frames Completed: 0, Remaining: 600
[19:03:53] - Dynamic steps required: 120000
[19:03:53]
[19:03:54] Printed current.prm
[19:03:54] Writing local files:
[19:03:54] - Writing "work/wudata_01.key": (overwrite)successful.
[19:03:54] - Writing "work/wudata_01.xyz": (overwrite)successful.
[19:03:54] - Writing "work/wudata_01.prm": (overwrite)successful.
[19:03:55] Starting design engine
[19:03:55] [SPG] project name: work/wudata_01.
[19:03:55] [SPG] 1 0
[19:03:55] [SPG] Initializing protein design engine
[19:03:55] [SPG] seed = 0
[19:03:55] [SPG] Initialization complete
[19:03:55] [SPG] Writing current.pdb, chainlength = 105
[19:03:55] [SPG] Writing current.xyz
[19:03:55] [SPG] Preprocessing . . .
[19:03:55] [SPG] 105 positions in protein


Input/Output Error 173: Input file ended

In Procedure: rotamerfilter..filter
At Line: 104

Statement: Formatted WRITE
Unit: 69
Connected To: work/rotamers.lib
Form: Formatted
Access: Sequential
Records Read : 0
Records Written: 195404

End of diagnostics

[19:05:21] CoreStatus = 0 (0)
[19:05:21] Client-core communications error: ERROR 0x0
[19:05:21] Deleting current work unit & continuing...
[19:05:24] + Attempting to get work packet
[19:05:24] - Connecting to assignment server
[19:05:25] - Successful: assigned to (171.64.122.125).
[19:05:25] + News From Folding@Home: Welcome to Folding@Home
[19:05:25] Loaded queue successfully.
[19:05:26] - Deadline time not received.
[19:05:27] + Closed connections
[19:05:32]
[19:05:32] + Processing work unit
[19:05:32] Core required: FahCore_ca.exe
[19:05:32] Core found.
[19:05:32] Working on Unit 02 [November 6 19:05:32]
[19:05:32] + Working ...
[19:05:32] Folding@home Protein Design Core Version 2.06 (Feb 25, 2003)
[19:05:32]
[19:05:32] Proj: work/wudata_02
[19:05:32] Finding work files
[19:05:32] sizeof(CORE_PACKET_HDR) = 512
[19:05:32] Checking frame files
[19:05:32] - Couldn't open work/wudata_02.chk
[19:05:32] Starting from initial work packet
[19:05:32]
[19:05:32] Updating shared core-client information
[19:05:32] - Writing "work/wudata_02.key": (overwrite)successful.
[19:05:32] Key file to update shared file: work/wudata_02.key
[19:05:32] keyfile: 0 104 200 15 2 1 0
[19:05:32] Protein: Des2/pdb1d4t.18.spa
[19:05:32] - Frames Completed: 0, Remaining: 600
[19:05:32] - Dynamic steps required: 120000
[19:05:32]
[19:05:33] Printed current.prm
[19:05:33] Writing local files:
[19:05:33] - Writing "work/wudata_02.key": (overwrite)successful.
[19:05:33] - Writing "work/wudata_02.xyz": (overwrite)successful.
[19:05:33] - Writing "work/wudata_02.prm": (overwrite)successful.
[19:05:33] Starting design engine
[19:05:33] [SPG] project name: work/wudata_02.
[19:05:33] [SPG] 1 0
[19:05:33] [SPG] Initializing protein design engine
[19:05:33] [SPG] seed = 0
[19:05:33] [SPG] Initialization complete
[19:05:33] [SPG] Writing current.pdb, chainlength = 104
[19:05:33] [SPG] Writing current.xyz
[19:05:34] [SPG] Preprocessing . . .
[19:05:34] [SPG] 104 positions in protein


Input/Output Error 173: Input file ended

In Procedure: rotamerfilter..filter
At Line: 104

Statement: Formatted WRITE
Unit: 69
Connected To: work/rotamers.lib
Form: Formatted
Access: Sequential
Records Read : 0
Records Written: 74331

End of diagnostics

[19:06:28] CoreStatus = 0 (0)
[19:06:28] Client-core communications error: ERROR 0x0
[19:06:28] - Attempting to download new core...
[19:06:28] + Downloading new core: FahCore_ca.exe
[19:06:33] + Error: Could not download core
[19:06:33] + Core download error (#2), waiting before retry...

[19:06:41] + Downloading new core: FahCore_ca.exe
[19:06:42] + 10240 bytes downloaded
[19:06:43] + 20480 bytes downloaded
[19:06:43] + Error: Could not download core
[19:06:43] + Core download error (#3), waiting before retry...

[19:06:55] + Downloading new core: FahCore_ca.exe
[19:06:56] + 10240 bytes downloaded
[19:06:56] + 20480 bytes downloaded
[19:06:56] + Error: Could not download core
[19:06:56] + Core download error (#4), waiting before retry...

[19:07:23] + Downloading new core: FahCore_ca.exe
[19:07:24] + Error: Could not download core
[19:07:24] + Core download error (#5), waiting before retry...

[19:08:06] + Downloading new core: FahCore_ca.exe
[19:08:07] + 10240 bytes downloaded
[19:08:08] + 20480 bytes downloaded
[19:08:08] + 30720 bytes downloaded
[19:08:08] + Error: Could not download core
[19:08:08] + Core download error (#6), waiting before retry...

[19:09:30] + Downloading new core: FahCore_ca.exe
[19:09:31] + 10240 bytes downloaded
[19:09:31] + 20480 bytes downloaded
[19:09:31] + 30720 bytes downloaded
[19:09:31] + 40960 bytes downloaded
[19:09:31] + Error: Could not download core
[19:09:31] + Core download error (#7), waiting before retry...

[19:12:19] + Downloading new core: FahCore_ca.exe
[19:12:21] + 10240 bytes downloaded
[19:12:21] + 20480 bytes downloaded
[19:12:22] + 30720 bytes downloaded
[19:12:22] + 40960 bytes downloaded
[19:12:22] + 51200 bytes downloaded
[19:12:22] + 61440 bytes downloaded
[19:12:22] + 71680 bytes downloaded
[19:12:22] + 81920 bytes downloaded
[19:12:22] + 92160 bytes downloaded
[19:12:23] + 102400 bytes downloaded
[19:12:23] + 112640 bytes downloaded
[19:12:23] + 122880 bytes downloaded
[19:12:23] + 133120 bytes downloaded
[19:12:24] + 143360 bytes downloaded
[19:12:24] + 153600 bytes downloaded
[19:12:24] + 163840 bytes downloaded
[19:12:24] + 174080 bytes downloaded
[19:12:24] + 184320 bytes downloaded
[19:12:24] + 194560 bytes downloaded
[19:12:24] + 204800 bytes downloaded
[19:12:24] + 215040 bytes downloaded
[19:12:25] + 225280 bytes downloaded
[19:12:25] + 235520 bytes downloaded
[19:12:25] + 245760 bytes downloaded
[19:12:25] + 256000 bytes downloaded
[19:12:25] + 266240 bytes downloaded
[19:12:25] + 276480 bytes downloaded
[19:12:25] + 286720 bytes downloaded
[19:12:26] + 296960 bytes downloaded
[19:12:26] + 307200 bytes downloaded
[19:12:26] + 317440 bytes downloaded
[19:12:26] + 327680 bytes downloaded
[19:12:26] + 337920 bytes downloaded
[19:12:26] + 348160 bytes downloaded
[19:12:26] + 358400 bytes downloaded
[19:12:27] + 368640 bytes downloaded
[19:12:27] + 378880 bytes downloaded
[19:12:27] + 389120 bytes downloaded
[19:12:27] + 399360 bytes downloaded
[19:12:27] + 409600 bytes downloaded
[19:12:27] + 419840 bytes downloaded
[19:12:27] + 430080 bytes downloaded
[19:12:27] + 440320 bytes downloaded
[19:12:28] + 450560 bytes downloaded
[19:12:28] + 460800 bytes downloaded
[19:12:28] + 471040 bytes downloaded
[19:12:28] + 481280 bytes downloaded
[19:12:28] + 491520 bytes downloaded
[19:12:28] + 501760 bytes downloaded
[19:12:29] + 512000 bytes downloaded
[19:12:29] + 522240 bytes downloaded
[19:12:29] + 532480 bytes downloaded
[19:12:29] + 542720 bytes downloaded
[19:12:29] + 552960 bytes downloaded
[19:12:29] + 563200 bytes downloaded
[19:12:29] + 573440 bytes downloaded
[19:12:29] + 583680 bytes downloaded
[19:12:30] + 593920 bytes downloaded
[19:12:30] + 604160 bytes downloaded
[19:12:30] + 614400 bytes downloaded
[19:12:30] + 624640 bytes downloaded
[19:12:30] + 634880 bytes downloaded
[19:12:30] + 645120 bytes downloaded
[19:12:30] + 655360 bytes downloaded
[19:12:30] + 665600 bytes downloaded
[19:12:31] + 675840 bytes downloaded
[19:12:31] + 686080 bytes downloaded
[19:12:31] + 696320 bytes downloaded
[19:12:31] + 706560 bytes downloaded
[19:12:31] + 706883 bytes downloaded
[19:12:31] Verifying core Core_ca.fah...
[19:12:31] Signature is VALID
[19:12:31] Created: Wednesday April 10, 2002 00:01:22 UTC
[19:12:31] Signed: Monday March 3, 2003 00:18:10 UTC
[19:12:31]
[19:12:31] Trying to unzip core FahCore_ca.exe
[19:12:32] Decompressed FahCore_ca.exe (2057360 bytes) successfully
[19:12:32] + Core successfully engaged
[19:12:32] Deleting current work unit & continuing...
[19:12:33] + Attempting to get work packet
[19:12:33] - Connecting to assignment server
[19:12:34] - Successful: assigned to (171.64.122.125).
[19:12:34] + News From Folding@Home: Welcome to Folding@Home
[19:12:34] Loaded queue successfully.
[19:12:35] - Couldn't send HTTP request to server
[19:12:35] + Could not connect to Work Server
[19:12:35] - Error: Getwork #1 failed, and no other work to do. Waiting before retry
[19:12:44] + Attempting to get work packet
[19:12:44] - Connecting to assignment server
[19:12:46] - Successful: assigned to (171.64.122.125).
[19:12:46] + News From Folding@Home: Welcome to Folding@Home
[19:12:46] Loaded queue successfully.
[19:12:46] - Couldn't send HTTP request to server
[19:12:46] + Could not connect to Work Server
[19:12:46] - Error: Getwork #2 failed, and no other work to do. Waiting before retry
[19:12:58] + Attempting to get work packet
[19:12:58] - Connecting to assignment server
[19:12:59] - Successful: assigned to (171.64.122.125).
[19:12:59] + News From Folding@Home: Welcome to Folding@Home
[19:12:59] Loaded queue successfully.
[19:13:00] - Couldn't send HTTP request to server
[19:13:00] + Could not connect to Work Server
[19:13:00] - Error: Getwork #3 failed, and no other work to do. Waiting before retry
[19:13:25] + Attempting to get work packet
[19:13:25] - Connecting to assignment server
[19:13:26] - Successful: assigned to (171.64.122.125).
[19:13:26] + News From Folding@Home: Welcome to Folding@Home
[19:13:26] Loaded queue successfully.
[19:13:27] - Deadline time not received.
[19:13:28] + Closed connections
[19:13:33]
[19:13:33] + Processing work unit
[19:13:33] Core required: FahCore_ca.exe
[19:13:33] Core found.
[19:13:33] Working on Unit 03 [November 6 19:13:33]
[19:13:33] + Working ...
[19:13:33] Folding@home Protein Design Core Version 2.06 (Feb 25, 2003)
[19:13:33]
[19:13:33] Proj: work/wudata_03
[19:13:33] Finding work files
[19:13:33] sizeof(CORE_PACKET_HDR) = 512
[19:13:33] Checking frame files
[19:13:33] - Couldn't open work/wudata_03.chk
[19:13:33] Starting from initial work packet
[19:13:33]
[19:13:33] Updating shared core-client information
[19:13:33] - Writing "work/wudata_03.key": (overwrite)successful.
[19:13:33] Key file to update shared file: work/wudata_03.key
[19:13:33] keyfile: 0 104 200 15 2 1 0
[19:13:33] Protein: Des2/pdb1d4t.10.spa
[19:13:33] - Frames Completed: 0, Remaining: 600
[19:13:33] - Dynamic steps required: 120000
[19:13:33]
[19:13:34] Printed current.prm
[19:13:34] Writing local files:
[19:13:34] - Writing "work/wudata_03.key": (overwrite)successful.
[19:13:34] - Writing "work/wudata_03.xyz": (overwrite)successful.
[19:13:35] - Writing "work/wudata_03.prm": (overwrite)successful.
[19:13:35] Starting design engine
[19:13:35] [SPG] project name: work/wudata_03.
[19:13:35] [SPG] 1 0
[19:13:35] [SPG] Initializing protein design engine
[19:13:35] [SPG] seed = 0
[19:13:35] [SPG] Initialization complete
[19:13:35] [SPG] Writing current.pdb, chainlength = 104
[19:13:35] [SPG] Writing current.xyz
[19:13:35] [SPG] Preprocessing . . .
[19:13:35] [SPG] 104 positions in protein
[19:16:05] [SPG] Preprocessing complete
[19:16:05] Iterations: 0 of 600
[19:16:06] Finished
[19:16:06] [SPG] Native chi angles stored
[19:16:11] [SPG] Rotamers read
[19:16:11] [SPG] Starting genetic algorithm
[19:18:56] [SPG] seed: 2130791
[19:18:56] [SPG] Designing protein sequence 1 of 30
[19:26:31] [SPG] 10.0 %
[19:34:13] [SPG] 20.0 %

Hilfe!

[Michael H.W. Weber]

Hm, sieht nach einer korrupten WU aus. Aber warum lädt das Steuerprogram einen neuen "core"? Was für Schalter hast Du aktiviert? Stanford werkelt gerade an einem neuen GAH "core". Allerdings ist die angegebene Versionsnummer identisch mit dem "normalen" GAH "core". Irgendwie ist in Deiner Kiste der Wurm drin. Ich würde das mal in Stanford posten. Oder ist die Platte voll, daß nichts mehr geschrieben werden kann?

Michael.

[Dennis Kautz]

Hmm...ich hab recht wenig Speicherplatz auf der Partition frei, aber dass es sooo wenig sein sollte... naja, hab erstmal ein GB freigemacht, vielleicht swappt Linux ja zu viel

Schalter hatte ich garkeine aktiviert..